SELECT 
  city_id, 
  city, 
  geo_lat, 
  geo_lon, 
  fias_id 
FROM 
  `cscart_custom_city` 
WHERE 
  `city_id` = 485

Query time 0.00034

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "1.00"
    },
    "table": {
      "table_name": "cscart_custom_city",
      "access_type": "const",
      "possible_keys": [
        "PRIMARY"
      ],
      "key": "PRIMARY",
      "used_key_parts": [
        "city_id"
      ],
      "key_length": "4",
      "ref": [
        "const"
      ],
      "rows_examined_per_scan": 1,
      "rows_produced_per_join": 1,
      "filtered": "100.00",
      "cost_info": {
        "read_cost": "0.00",
        "eval_cost": "0.10",
        "prefix_cost": "0.00",
        "data_read_per_join": "5K"
      },
      "used_columns": [
        "city_id",
        "city",
        "fias_id",
        "geo_lat",
        "geo_lon"
      ]
    }
  }
}